DreEX0065093 @ danRer10
Exon Skipping
Gene
ENSDARG00000079611 | sema4c
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
Coordinates
chr5:14053917-14060859:-
Coord C1 exon
chr5:14060761-14060859
Coord A exon
chr5:14054270-14054366
Coord C2 exon
chr5:14053917-14054036
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTCCGTCTGATAGAAT
3' ss Score
8.26
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTGAGTGCTTCAACTACATTCGCTTCCTGCAGAGCTACAATCACACGCACCTGTATACATGCGGGACGTACGCCTTCCAGCCCAAATGCACCTACATT
Seq A exon
AATGCAGATCATTTCACTCTGGATAGCGCCGCCCTGGAGGACGGCAAGGGAAAGTGCCCTTACGACCCCGCCAAAGGTCATACAGGCCTCATTGTGG
Seq C2 exon
ACAAAGAGTTGTACTCCGCCACCCTCAATAACTTTCTGGGCACCGAGCCCGTAATCCTGAGGAACCTGGGACAACAGCATTACAGCATGAAGAGTGAATACCTGCCGGCCTGGCTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079611-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.4=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(9.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAATCACACGCACCTG
R:
GCCGGCAGGTATTCACTCTTC
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]