BtaEX6042609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021920 | SEMA4C
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:HGNC Symbol;Acc:HGNC:10731]
Coordinates
chr11:2788719-2789222:-
Coord C1 exon
chr11:2789124-2789222
Coord A exon
chr11:2788953-2789049
Coord C2 exon
chr11:2788719-2788835
Length
97 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGTCCCCACCCCTAGGAC
3' ss Score
9.93
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACGGAGTGTTTCAATTTCATCCGCTTCCTGCAGCCATATAACACATCCCACCTGTACGTGTGCGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATT
Seq A exon
GACATGCTCACCTTCACCCTGGAGCGGAGTGAGTTTGAGGATGGCAAGGGCAAGTGCCCCTATGACCCGGCCAAGGGCCACACCGGCCTCCTTGTGG
Seq C2 exon
ACGGTGAGCTGTACTCGGCCACGCTCAACAATTTCCTGGGCACGGAGCCAGTCATCCTGCGGAACATGGGGCCCCATCACGCCATGAAGACCGAGTACCTGGCCTTCTGGCTCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021920-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.5=100)
A:
PF0140314=Sema=FE(7.5=100)
C2:
PF0140314=Sema=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCTTCCTGCAGCCATATA
R:
GTACTCGGTCTTCATGGCGTG
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]