GgaEX6041371 @ galGal3
Exon Skipping
Gene
ENSGALG00000002552 | COL3A1
Description
NA
Coordinates
chr7:579537-579977:-
Coord C1 exon
chr7:579933-579977
Coord A exon
chr7:579743-579841
Coord C2 exon
chr7:579537-579644
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACATGTTTCTTTGTCACAGGGT
3' ss Score
8.49
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGGCCAAAAGGTGATATTGGAGGACCCGGATTCCCAGGCCCTAAG
Seq A exon
GGTGAAAATGGCATCCCAGGTGAACGTGGTGCACAAGGTCCTCCAGGACCTACTGGAGCAAGAGGTGGGCCAGGTCCTGCTGGCTCCGAAGGTGCCAAG
Seq C2 exon
GGTCCTCCTGGTCCCCCTGGTGCCCCTGGAGGCACAGGGCTGCCTGGTTTACAGGGAATGCCAGGAGAAAGAGGAGCTTCTGGGAGTCCTGGACCCAAAGGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002552-'36-39,'36-38,37-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.4=100),PF0139113=Collagen=PU(9.8=53.3)
A:
PF0139113=Collagen=PD(19.4=42.4),PF0139113=Collagen=FE(39.0=100)
C2:
PF0139113=Collagen=FE(42.7=100),PF0139113=Collagen=PU(34.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAAAGGTGATATTGGAGGA
R:
CCTTTGGGTCCAGGACTCCC
Band lengths:
145-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]