RnoEX0023186 @ rn6
Exon Skipping
Gene
ENSRNOG00000003357 | Col3a1
Description
collagen type III alpha 1 chain [Source:RGD Symbol;Acc:71029]
Coordinates
chr9:52047041-52047844:+
Coord C1 exon
chr9:52047041-52047085
Coord A exon
chr9:52047552-52047650
Coord C2 exon
chr9:52047737-52047844
Length
99 bp
Sequences
Splice sites
3' ss Seq
ACAATGTGCTTCAATGATAGGGT
3' ss Score
5.68
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGTCCAAAGGGTGAAGCTGGAGCACCTGGAGTTCCTGGAGGCAAG
Seq A exon
GGTGATTCTGGTGCCCCTGGAGAACGTGGACCCCCTGGAACCGCAGGAACCCCTGGGCTTAGAGGTGGAGCTGGACCCCCTGGGCCTGAGGGAGGAAAG
Seq C2 exon
GGCCCTGCTGGTCCCCCTGGTCCCCCTGGTACTTCTGGTCCTCCTGGTCTGCAAGGGATGCCAGGAGAGAGAGGAGGTCCTGGGAGTCCTGGCCCAAAGGGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003357-'45-36,'45-35,46-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAAGGGTGAAGCTGGAG
R:
CCTTTGGGCCAGGACTCCC
Band lengths:
144-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]