GgaEX6042488 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21123641-21126385:+
Coord C1 exon
chr7:21123641-21123778
Coord A exon
chr7:21125235-21125339
Coord C2 exon
chr7:21126115-21126385
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTGATTTTATGTTTTTACTTT
3' ss Score
-0.01
5' ss Seq
GGGGTAAAA
5' ss Score
2.56
Exon sequences
Seq C1 exon
GTGTTACAGCAACCCAAGTATGAAGACAACCTGTACATGTATTTGTATTTTGTCATCTTTATCATTTTTGGGTCTTTTTTCACCCTGAATCTGTTCATTGGTGTCATCATTGATAACTTCAATCAGCAGAAAAAGAAG
Seq A exon
TTTGGAGGTCAAGACATATTTATGACAGAAGAGCAGAAGAAATACTACAATGCAATGAAAAAGCTGGGATCCAAAAAACCACAAAAGCCTATACCAAGACCAGGG
Seq C2 exon
AACAAGTTTCAAGGCATGGTCTTTGATTTTGTGACACAGCAAGTATTCGACATTAGCATCATGATTCTTATCTGTCTTAACATGGTTACCATGATGGTAGAAACTGATGACCAGAGTAAAGAAATGGAAAATATTTTATACTGGATAAACTTGGTGTTCATTGTCCTTTTCACTGGAGAATGTGTCCTGAAATTAATTTCACTCCGCCATTATTATTTCACTATAGGCTGGAATATTTTTGATTTTGTAGTTGTCATTCTCTCAATAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(15.3=76.1)
A:
NO
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAATCTGTTCATTGGTGT
R:
TCAGGACACATTCTCCAGTGA
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]