Special

ENSBTAG00000002425 @ bosTau6

Biotype
protein_coding
Gene Symbol
SCN9A
Description
sodium channel, voltage gated, type IX alpha subunit [Source:HGNC Symbol;Acc:HGNC:10597]
Coordinates
chr2:30093697-30184706:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
42.18
55.46
1
Alternative 5'ss
33
chr2:30120397-30120429
+
53.51
63.16
1
Alternative 5'ss
57
chr2:30120397-30120453
+
4.31
10.42
0
Exon Skipping
38
chr2:30167845-30167882
+
12.85
36.39
0
Exon Skipping
92
chr2:30103012-30103103
+
95.93
13.05
1
Exon Skipping
174
chr2:30161141-30161314
+
96.16
13.48
0
Intron Retention
4118
chr2:30164083-30168200
+
33.51
82.05
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000169432 SCN9A 1-to-1
Human hg19 ENSG00000169432 SCN9A 1-to-1
Mouse mm10 ENSMUSG00000075316 Scn9a 1-to-1
Mouse mm9 ENSMUSG00000075316 Scn9a 1-to-1
Rat rn6 ENSRNOG00000006639 Scn9a 1-to-1
Chicken galGal4 ENSGALG00000027793 2-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1