Special

ENSG00000169432 @ hg38

Biotype
protein_coding
Gene Symbol
SCN9A
Description
sodium voltage-gated channel alpha subunit 9 [Source:HGNC Symbol;Acc:HGNC:10597]
Coordinates
chr2:166195185-166375993:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
0.19
4.16
1
Alternative 5'ss
125
chr2:166284486-166284610
-
83.76
53.03
1
Alternative 5'ss
158
chr2:166284453-166284610
-
15.82
53.03
1
Alternative 5'ss
182
chr2:166284429-166284610
-
0.23
3.21
1
Exon Skipping
209
chr2:166302092-166302300
-
4.35
25
0
Exon Skipping
271
chr2:166203955-166204225
-
88.29
73.08
0
Exon Skipping
92
chr2:166304238-166304329
-
82.5
65.56
1
Exon Skipping
142
chr2:166293231-166293372
-
96.49
27.84
0
Intron Retention
2677
chr2:166281809-166284485
-
9.08
25.5
0
Intron Retention
4107
chr2:166272876-166276982
-
10.58
29.65
0
Intron Retention
1462
chr2:166304330-166305791
-
9.11
29.66
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000075316 Scn9a 1-to-1
Mouse mm9 ENSMUSG00000075316 Scn9a 1-to-1
Rat rn6 ENSRNOG00000006639 Scn9a 1-to-1
Cow bosTau6 ENSBTAG00000002425 SCN9A 1-to-1
Chicken galGal4 ENSGALG00000027793 2-to-1
Fruitfly dm6 FBgn0264255 para 10-to-1