Special

ENSMUSG00000075316 @ mm9

Biotype
protein_coding
Gene Symbol
Scn9a
Description
sodium channel, voltage-gated, type IX, alpha [Source:MGI Symbol;Acc:MGI:107636]
Coordinates
chr2:66318137-66473009:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
23.13
66.18
1
Alternative 5'ss
33
chr2:66378321-66378353
-
76.87
66.18
1
Exon Skipping
92
chr2:66401597-66401688
-
86.41
24.84
1
Exon Skipping
81
chr2:66359823-66359903
-
11.61
32.14
0
Intron Retention
11175
chr2:66353490-66364664
-
11.05
40
0
Intron Retention
6640
chr2:66346732-66353371
-
8.26
40.85
0
Intron Retention
1717
chr2:66404347-66406063
-
8.49
30.7
0
Intron Retention
3497
chr2:66343080-66346576
-
8.02
44.15
0
Intron Retention
669
chr2:66331997-66332665
-
8.73
47.11
0
Intron Retention
4992
chr2:66326144-66331135
-
9.78
24.43
0
Intron Retention
2770
chr2:66322662-66325431
-
12.94
64.71
0
Intron Retention
546
chr2:66403289-66403834
-
12.29
41.21
0
Intron Retention
1471
chr2:66401689-66403159
-
14.3
16.43
0
Intron Retention
981
chr2:66400616-66401596
-
15.52
23.47
0
Intron Retention
1218
chr2:66387179-66388396
-
56.07
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000169432 SCN9A 1-to-1
Human hg19 ENSG00000169432 SCN9A 1-to-1
Rat rn6 ENSRNOG00000006639 Scn9a 1-to-1
Cow bosTau6 ENSBTAG00000002425 SCN9A 1-to-1
Chicken galGal4 ENSGALG00000027793 2-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1