Special

ENSG00000169432 @ hg19

Biotype
protein_coding
Gene Symbol
SCN9A
Description
sodium channel, voltage-gated, type IX, alpha subunit [Source:HGNC Symbol;Acc:10597]
Coordinates
chr2:167051695-167232503:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
0.27
4.16
1
Alternative 5'ss
125
chr2:167140996-167141120
-
82.15
51.09
1
Alternative 5'ss
158
chr2:167140963-167141120
-
17.58
53.03
1
Exon Skipping
140
chr2:167158671-167158810
-
5.59
26.83
0
Exon Skipping
271
chr2:167060465-167060735
-
87.42
73.08
0
Exon Skipping
92
chr2:167160748-167160839
-
71.04
92.82
1
Exon Skipping
92
chr2:167160541-167160632
-
20.8
99.36
1
Exon Skipping
142
chr2:167149741-167149882
-
95.58
27.84
0
Intron Retention
4107
chr2:167129386-167133492
-
10.26
28.4
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000075316 Scn9a 1-to-1
Mouse mm9 ENSMUSG00000075316 Scn9a 1-to-1
Rat rn6 ENSRNOG00000006639 Scn9a 1-to-1
Cow bosTau6 ENSBTAG00000002425 SCN9A 1-to-1
Chicken galGal4 ENSGALG00000027793 2-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1