Special

ENSMUSG00000075316 @ mm10

Biotype
protein_coding
Gene Symbol
Scn9a
Description
sodium channel, voltage-gated, type IX, alpha [Source:MGI Symbol;Acc:MGI:107636]
Coordinates
chr2:66480080-66634962:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
22.34
58.03
1
Alternative 5'ss
33
chr2:66540264-66540296
-
74.11
66.56
1
Alternative 5'ss
57
chr2:66540240-66540296
-
3.55
11.21
1
Exon Skipping
92
chr2:66563540-66563631
-
81.47
58.96
1
Exon Skipping
81
chr2:66521766-66521846
-
7.56
32.14
0
Exon Skipping
119
chr2:66566171-66566289
-
96.51
18.75
0
Intron Retention
11175
chr2:66515433-66526607
-
6.81
40
0
Intron Retention
6640
chr2:66508675-66515314
-
6.25
40.85
0
Intron Retention
1717
chr2:66566290-66568006
-
5.7
30.7
0
Intron Retention
6722
chr2:66494891-66501612
-
15.69
82.44
0
Intron Retention
669
chr2:66493940-66494608
-
7.76
47.11
0
Intron Retention
4992
chr2:66488087-66493078
-
8.92
24.43
0
Intron Retention
2770
chr2:66484605-66487374
-
12.16
78.95
0
Intron Retention
546
chr2:66565232-66565777
-
8.23
41.21
0
Intron Retention
1471
chr2:66563632-66565102
-
11.64
20.01
0
Intron Retention
981
chr2:66562559-66563539
-
9.02
29.23
0
Intron Retention
1218
chr2:66549122-66550339
-
48.59
100
0
Intron Retention
11942
chr2:66550404-66562345
-
15.47
72.73
0
Intron Retention
1750
chr2:66547230-66548979
-
38.27
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000169432 SCN9A 1-to-1
Human hg19 ENSG00000169432 SCN9A 1-to-1
Rat rn6 ENSRNOG00000006639 Scn9a 1-to-1
Cow bosTau6 ENSBTAG00000002425 SCN9A 1-to-1
Chicken galGal4 ENSGALG00000027793 2-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1