MmuEX1023114 @ mm10
Exon Skipping
Gene
ENSMUSG00000075316 | Scn9a
Description
sodium channel, voltage-gated, type IX, alpha [Source:MGI Symbol;Acc:MGI:107636]
Coordinates
chr2:66565778-66568314:-
Coord C1 exon
chr2:66568007-66568314
Coord A exon
chr2:66566171-66566289
Coord C2 exon
chr2:66565778-66565867
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTTTCCTCCTCAGACT
3' ss Score
11.34
5' ss Seq
CTCATATCC
5' ss Score
-13.36
Exon sequences
Seq C1 exon
GCCTCTTAGGTAAGGATCCGAAGGGGAAATAAAACCTACAGGATGAGAAGATGGCGATGTTGCCTCCGCCAGGACCTCAGAGCTTCGTTCACTTCACAAAACAGTCCCTTGCCCTCATTGAACAACGCATTTCTGAAGAAAAAGCCAAGGGACACAAAGATGAAAAGAAAGATGATGAGGAAGAAGGTCCCAAGCCCAGTAGTGACTTGGAAGCAGGTAAACAGCTACCCTTCATCTACGGAGACATTCCCCCGGGAATGGTGTCAGAGCCCCTGGAGGACCTGGACCCATACTATGCAGACAAAAAA
Seq A exon
ACTTTTATAGTATTGAACAAAGGGAAAGCAATCTTCCGTTTCAACGCCACCCCTGCTTTGTACATGCTGTCTCCCTTCAGTCCTCTCAGAAGAATATCTATTAAGATTTTAGTGCACTC
Seq C2 exon
CTTATTCAGCATGCTAATCATGTGCACAATTCTGACAAACTGCATATTCATGACCATGAGCAACCCTCCAGATTGGACCAAAAACGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075316_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGGGACACAAAGATGA
R:
TCCAATCTGGAGGGTTGCTCA
Band lengths:
243-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types