GgaEX6042536 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:21393883-21396381:+
Coord C1 exon
chr7:21393883-21393977
Coord A exon
chr7:21395468-21395596
Coord C2 exon
chr7:21396290-21396381
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTGATGCATTTCAGGTA
3' ss Score
9.87
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
TCTACATTATTCAGCATGCTTATCATGTGCACTATTTTGACAAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTAGA
Seq A exon
GTACACTTTCACTGGAATTTATACCTTTGAATCACTGATAAAAATTCTTGCAAGGGGCTTCTGCTTAGAAGGTTTTACTTTTCTGCGAGACCCATGGAACTGGCTTGACTTCAGTGTCATTCTAATGGC
Seq C2 exon
ATATGTGACAGAGTTTGTGGACCTGGGCAATGTCTCAGCGCTGAGAACATTCAGAGTTCTCCGAGCTTTGAAAACAATATCAGTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'2-5,'2-3,3-5=AN
Average complexity
A_C2
Mappability confidence:
50%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=6.2)
A:
PF0052026=Ion_trans=FE(16.0=100)
C2:
PF0052026=Ion_trans=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTTATCATGTGCACTATTTTGA
R:
GGAATGACTGATATTGTTTTCAAAGC
Band lengths:
171-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]