DreEX6096646 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40702255-40717997:+
Coord C1 exon
chr24:40702255-40702344
Coord A exon
chr24:40706396-40706524
Coord C2 exon
chr24:40717906-40717997
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTTAATGCACAGGTA
3' ss Score
9.44
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
TTTATTCAGTCTTTTCATTATGTGCACTATTCTGACCAACTGTTGCTTCATGGCCATGTCTGAACCGGCGCAGTGGGCCAAATACGTGGA
Seq A exon
GTACACTTTCACTGGCATTTACACGTTCGAGTCGTTGATAAAGATCCTGGCGCGGGGTTTCTGCATCGGGCCCTTCACATTTCTGAGGGACCCCTGGAACTGGCTGGATTTCAGTGTGATTCTGATGGC
Seq C2 exon
ATATGTAACTGAGTTTGTGGACCTGGGCAATGTCTCAGCGTTACGGACATTCAGGGTTCTGCGAGCACTGAAAACTATCTCAGTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'2-4,'2-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(16.5=100)
C2:
PF0052026=Ion_trans=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTCTTTTCATTATGTGCACT
R:
CTGGGATGACTGAGATAGTTTTCAGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]