DmeEX0009015 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16506348-16513920:-
Coord C1 exon
chrX:16513715-16513920
Coord A exon
chrX:16509576-16509704
Coord C2 exon
chrX:16506348-16506439
Length
129 bp
Sequences
Splice sites
3' ss Seq
GAAATTCAATTCGTTTTTAGGGT
3' ss Score
8.05
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
ACATTCGTAGTTGTAAGCAAAGGAAAAGATATTTTTCGCTTTTCTGCATCAAAAGCAATGTGGATGCTCGATCCATTCAATCCGATACGTCGTGTGGCCATTTACATTCTAGTGCATCCATTATTTTCCCTATTCATCATCACCACAATTCTCGTCAACTGCATCCTGATGATAATGCCGACAACGCCCACGGTTGAGTCCACTGA
Seq A exon
GGTGATATTCACCGGAATCTACACATTTGAATCAGCTGTTAAAGTGATGGCACGAGGTTTCATTTTATGCCCGTTTACGTATCTTAGAGATGCATGGAATTGGCTGGACTTCGTAGTAATAGCTTTAGC
Seq C2 exon
TTATGTGACCATGGGTATAGATTTAGGTAATCTAGCAGCCCTGCGAACGTTTAGGGTGCTGCGAGCGCTTAAAACCGTAGCCATTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(22.1=84.1)
A:
PF0052026=Ion_trans=FE(17.3=100)
C2:
PF0052026=Ion_trans=FE(12.4=100)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0292712
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
FBpp0292713, FBpp0292714, FBpp0292715
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGCAATGTGGATGCTCGA
R:
TGGCACAATGGCTACGGTTTT
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)