DreEX6023024 @ danRer10
Exon Skipping
Gene
ENSDARG00000018032 | scn8ab
Description
sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
Coordinates
chr6:39453715-39461882:-
Coord C1 exon
chr6:39461795-39461882
Coord A exon
chr6:39460678-39460806
Coord C2 exon
chr6:39453715-39453806
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTTATCGCTCTATGTCAGGTA
3' ss Score
7.31
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
TTTTCAGCATGATCATCATGTGTACAATTTTGACAAATTGTGTCTTCATGACATTCAGCAATCCTCCAGAATGGTCCAAACAAGTAGA
Seq A exon
GTACACCTTCACAGGAATCTACACTTTCGAGTCTCTCACAAAGATTGTGGCTCGAGGTTTCTGTATAGACGACTTCACCTTCCTCAGAGACCCCTGGAACTGGCTGGATTTCATGGTCATCTCTATGGC
Seq C2 exon
ATATGTAACAGAGTTTGTGGACCTGGGGAATGTGTCAGCCCTGAGAACCTTCAGGGTTCTACGAGCTCTCAAAACTATTTCTGTCATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018032-'7-6,'7-4,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.7)
A:
PF0052026=Ion_trans=FE(17.1=100)
C2:
PF0052026=Ion_trans=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCATGTGTACAATTTTGACA
R:
TGGTATGACAGAAATAGTTTTGAGAG
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]