RnoEX6034139 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142595604-142598406:+
Coord C1 exon
chr7:142595604-142595693
Coord A exon
chr7:142596152-142596280
Coord C2 exon
chr7:142598315-142598406
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGCATCCCCGACAGGTA
3' ss Score
9.45
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGTTTTCAGCATGATCATCATGTGCACCATCCTGACCAACTGTGTGTTCATGACCTTTAGTAACCCTCCAGAATGGTCCAAGAATGTGGA
Seq A exon
GTACACATTCACAGGGATTTACACATTTGAATCACTAGTGAAAATCATCGCAAGAGGTTTCTGCATAGACGGCTTCACCTTCTTACGAGACCCGTGGAACTGGTTAGACTTCAGTGTCATCATGATGGC
Seq C2 exon
ATATGTGACAGAGTTTGTGGACCTGGGCAATGTCTCAGCGCTGAGAACATTCAGGGTTCTCCGAGCTTTGAAAACTATCTCTGTAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'9-11,'9-8,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(17.1=100)
C2:
PF0052026=Ion_trans=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCATGTGCACCATCCTG
R:
ACAGAGATAGTTTTCAAAGCTCGGA
Band lengths:
163-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]