DreEX0064502 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52393561-52405496:-
Coord C1 exon
chr2:52405416-52405496
Coord A exon
chr2:52402449-52402577
Coord C2 exon
chr2:52393561-52393652
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATGTGTTTCTTCAGGTA
3' ss Score
11.53
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CTTGTTCATCATGTGCACTATTTTGACAAACTGCTGCTTCATGGCGATGTCAGATCCTCCTCTCTGGACCAAATACCTCGA
Seq A exon
GTATACATTCACTGGCATTTACACATTCGAGTCTCTGATTAAGATCTTGGCCAGAGGGTTTTGTACTGAGTGTTTCACCTTCCTCCGAGACCCATGGAACTGGCTGGATTTCAGTGTCATCGTCATGGC
Seq C2 exon
GTATGTGACAGAGTTTGTGGACCTGGGAAATGTATCAGCATTGCGAACGTTCAGAGTTCTGCGGGCTCTAAAAACAATATCGGTGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=7.1)
A:
PF0052026=Ion_trans=FE(16.7=100)
C2:
PF0052026=Ion_trans=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATCATGTGCACTATTTTGACA
R:
CTGGGATCACCGATATTGTTTTT
Band lengths:
171-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]