MmuEX6069768 @ mm9
Exon Skipping
Gene
ENSMUSG00000032511 | Scn5a
Description
sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]
Coordinates
chr9:119452217-119461193:-
Coord C1 exon
chr9:119461104-119461193
Coord A exon
chr9:119459724-119459852
Coord C2 exon
chr9:119452217-119452308
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGATGGCCTCTCCTCCTCAGGTA
3' ss Score
9.22
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GCTCTTCAGCATGCTCATCATGTGCACCATCCTAACCAACTGTGTGTTCATGGCACAACACGACCCTCCGCCTTGGACCAAATATGTTGA
Seq A exon
GTACACCTTCACCGCCATCTACACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAGGCTTCTGCCTGCATGCGTTCACCTTCCTCCGGGACCCGTGGAACTGGCTAGACTTCAGTGTGATCGTCATGGC
Seq C2 exon
ATACACAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTACGCACCTTCCGAGTCCTCCGGGCCCTGAAAACTATATCGGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032511-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(16.9=100)
C2:
PF0052026=Ion_trans=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCAGCATGCTCATCAT
R:
AATGACCGATATAGTTTTCAGGGCC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: