GgaEX6018332 @ galGal3
Exon Skipping
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5391015-5397915:+
Coord C1 exon
chr2:5391015-5391112
Coord A exon
chr2:5394358-5394486
Coord C2 exon
chr2:5397824-5397915
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCGGACACTTTATTCCCCAGGTA
3' ss Score
7.88
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
CTATTTACATTGTTCAGTATGTTTATTATGTGCACTATTTTAACTAATTGTGTGTTCATGGCACAATCAGAGACTCCATCATGGAATAAATATGTTGA
Seq A exon
GTACACTTTCACTGGCATTTACACTTTTGAGTCATTGATAAAAATATTGGCGAGAGGATTTTGCATGACAGAATTCACCTTCCTTCGAGATCCATGGAACTGGCTGGATTTCAGTGTTATCGTTATGGC
Seq C2 exon
ATACATAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTGCGAACGTTCAGAGTACTGCGGGCGCTGAAAACAATCTCAGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'2-5,'2-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.1)
A:
PF0052026=Ion_trans=FE(16.9=100)
C2:
PF0052026=Ion_trans=FE(14.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGTATGTTTATTATGTGCACT
R:
TGAAATGACTGAGATTGTTTTCAGCG
Band lengths:
179-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]