BtaEX6093421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12081575-12089971:-
Coord C1 exon
chr22:12089882-12089971
Coord A exon
chr22:12088428-12088556
Coord C2 exon
chr22:12081575-12081666
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGCTGATCTCTCCTCCCCAGGTA
3' ss Score
10.57
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GCTCTTCAGCATGCTCATCATGTGTACCATTCTGACCAACTGCGTGTTCATGGCCCAGCACGACCCTCCGCCCTGGACCAAATATGTCGA
Seq A exon
GTACATCTTCACTGCCATCTACACCTTTGAGTCTCTGGTCAAGATTCTGGCTCGAGGCTTCTGCCTGCACGCGTTCACCTTCCTTCGGGACCCGTGGAACTGGCTGGACTTCAGCGTGATCATCATGGC
Seq C2 exon
ATACACCACTGAATTTGTGGACCTGGGCAATGTCTCAGCTTTACGTACCTTCCGAGTCCTCCGGGCCCTGAAAACTATATCAGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'3-7,'3-5,4-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(16.7=100)
C2:
PF0052026=Ion_trans=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCAGCATGCTCATCAT
R:
AATGACTGATATAGTTTTCAGGGCCC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]