GgaEX6018332 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5455573-5462463:+
Coord C1 exon
chr2:5455573-5455660
Coord A exon
chr2:5458906-5459034
Coord C2 exon
chr2:5462372-5462463
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCGGACACTTTATTCCCCAGGTA
3' ss Score
7.88
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
TGTTCAGTATGTTTATTATGTGCACTATTTTAACTAATTGTGTGTTCATGGCACAATCAGAGACTCCATCATGGAATAAATATGTTGA
Seq A exon
GTACACTTTCACTGGCATTTACACTTTTGAGTCATTGATAAAAATATTGGCGAGAGGATTTTGCATGACAGAATTCACCTTCCTTCGAGATCCATGGAACTGGCTGGATTTCAGTGTTATCGTTATGGC
Seq C2 exon
ATACATAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTGCGAACGTTCAGAGTACTGCGGGCGCTGAAAACAATCTCAGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'6-9,'6-7,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.7)
A:
PF0052026=Ion_trans=FE(16.9=100)
C2:
PF0052026=Ion_trans=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGTATGTTTATTATGTGCACT
R:
TGAAATGACTGAGATTGTTTTCAGCG
Band lengths:
179-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]