RnoEX6038190 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128228769-128236912:-
Coord C1 exon
chr8:128236823-128236912
Coord A exon
chr8:128235575-128235703
Coord C2 exon
chr8:128228769-128228860
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGACGGCCTCTCCTCCTCAGGTA
3' ss Score
10.35
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
GCTCTTTAGCATGCTCATCATGTGCACCATCCTGACCAACTGCGTGTTCATGGCCCAGCACGACCCTCCGCCTTGGACCAAATATGTTGA
Seq A exon
GTACACCTTCACTGCCATCTACACCTTTGAGTCTCTGGTCAAGATTCTAGCTCGAGGCTTCTGCCTGCATGCATTCACCTTCCTTCGGGACCCGTGGAACTGGCTAGACTTCAGTGTGATCGTCATGGC
Seq C2 exon
ATACACAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTACGCACCTTCCGAGTCCTCCGGGCCCTGAAAACTATATCGGTCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'9-9,'9-7,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(16.9=100)
C2:
PF0052026=Ion_trans=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATCATGTGCACCATCC
R:
TGAAATGACCGATATAGTTTTCAGGG
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]