DreEX6016245 @ danRer10
Exon Skipping
Gene
ENSDARG00000034588 | scn4ab
Description
sodium channel, voltage-gated, type IV, alpha, b [Source:ZFIN;Acc:ZDB-GENE-051201-1]
Coordinates
chr3:22143743-22148742:+
Coord C1 exon
chr3:22143743-22143823
Coord A exon
chr3:22145176-22145304
Coord C2 exon
chr3:22148651-22148742
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTATTTGAATCCCTACAGGTA
3' ss Score
10.1
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
CTTAGTCATCATGCTAACCATCCTGACAAACTGTGTGTTCATGGCGATGAGCGACCCTCCAGGCTGGAGCAAAATATTAGA
Seq A exon
GTACGTTTTCACTGGCATCTACACCTTTGAGGCAATGGTAAAGGTTCTGTCCAGAGGTTTCTGCATTGGCGATTTCACATTCCTACGGGACCCGTGGAACTGGCTTGATTTCATGGTCATCAGCATGGC
Seq C2 exon
GTACCTCACAGAGTTTGTGGACTTGGGGAATATATCCGCTTTGAGGACTTTCCGTGTTCTCCGTGCCCTGAAAACAATCACTGTAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034588-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=7.1)
A:
PF0052026=Ion_trans=FE(16.3=100)
C2:
PF0052026=Ion_trans=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGTCATCATGCTAACCATCCTGAC
R:
GGAATTACAGTGATTGTTTTCAGGGC
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]