RnoEX6050152 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94539580-94540606:-
Coord C1 exon
chr10:94540517-94540606
Coord A exon
chr10:94540092-94540220
Coord C2 exon
chr10:94539580-94539671
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACTGGCTCTCTTCTCTCCAGGTA
3' ss Score
11.87
5' ss Seq
GGCGTGAGC
5' ss Score
2.44
Exon sequences
Seq C1 exon
GCTGTTCAGCATGTTTATCATGATCACCATCCTGACCAACTGTGTGTTCATGACCATGAGCAATCCGCCTTCTTGGTCCAAACACGTGGA
Seq A exon
GTACACCTTCACGGGGATCTATACCTTTGAGTCCCTCATTAAGATGCTGGCCCGAGGCTTTTGCATTGATGACTTCACATTCCTCCGAGACCCCTGGAACTGGCTGGACTTCAGTGTCATCACAATGGC
Seq C2 exon
GTATGTGACAGAGTTTGTGGACTTGGGCAACATCTCAGCCCTGAGGACCTTCCGTGTGCTGCGGGCCCTGAAGACCATCACGGTTATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=6.5)
A:
PF0052026=Ion_trans=FE(15.2=100)
C2:
PF0052026=Ion_trans=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTATCATGATCACCATCCTGACC
R:
CCGTGATGGTCTTCAGGGC
Band lengths:
162-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]