DreEX6067621 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4835322-4836687:+
Coord C1 exon
chr12:4835322-4835411
Coord A exon
chr12:4835971-4836099
Coord C2 exon
chr12:4836596-4836687
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTTGATGTGTTATTGCAGGTA
3' ss Score
8.32
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTTATTTAGCATGTTCATCATGATCACCATCCTGTCCAATTGCGTGTTCATGACGATGAGTAACCCTCCAGCCTGGAGTAAAACTGTCGA
Seq A exon
GTATGTTTTTACTGGTATATATACCTTTGAAGCGACTGTCAAAGTTTTATCCCGAGGCTTCTGCATTGGACCTTTTACATTCCTCCGTGATCCATGGAACTGGCTTGATTTCATGGTGATCAGCATGGC
Seq C2 exon
GTACGTCACAGAGTTTGTAGACCTTGGCAATGTGTCAGCACTGAGGACATTTCGTGTGCTTCGAGCTCTCAAAACAATCACAGTTATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.8=6.5)
A:
PF0052026=Ion_trans=FE(16.4=100)
C2:
PF0052026=Ion_trans=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTCATCATGATCACCATCCTGT
R:
GGAATAACTGTGATTGTTTTGAGAGC
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]