BtaEX6089636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48823978-48825021:-
Coord C1 exon
chr19:48824941-48825021
Coord A exon
chr19:48824548-48824676
Coord C2 exon
chr19:48823978-48824069
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCCTCTCCCTGCCAGGTA
3' ss Score
11.11
5' ss Seq
GGCGTGAGC
5' ss Score
2.44
Exon sequences
Seq C1 exon
CATGTTCATTATGATCACCATCCTGACCAACTGCGTGTTCATGACCATGAGTGACCCGCCTTCCTGGTCCAAGCACGTGGA
Seq A exon
GTACACCTTCACAGGGATCTACACCTTCGAGTCCCTCATCAAGATCCTGGCCCGAGGCTTCTGCATCGATGACTTCACATTCCTCCGGGATCCCTGGAACTGGCTGGACTTCAGCGTCATCATGATGGC
Seq C2 exon
GTACCTGACGGAATTTGTGGACTTGGGCAACATCTCAGCGCTGAGAACCTTCCGGGTGCTGCGGGCCCTGAAAACCATCACGGTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=7.1)
A:
PF0052026=Ion_trans=FE(15.2=100)
C2:
PF0052026=Ion_trans=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATTATGATCACCATCCTGACCA
R:
CTGGGATGACCGTGATGG
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]