GgaEX6027183 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1651435-1652293:-
Coord C1 exon
chr27:1652197-1652293
Coord A exon
chr27:1651613-1651741
Coord C2 exon
chr27:1651435-1651526
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGTCACCATTCCCATTTTAGATA
3' ss Score
8.34
5' ss Seq
GGCGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
ACTGTAAATTATTCAGCATGTTCATCATGATCACCATTTTAACCAACTGTGTGTTTATGACACTGAGCAACCCCCCGGCGTGGTCCAAGAACGTGGA
Seq A exon
ATACACCTTCACTGGAATATACACCTTCGAGTCCCTCATCAAGATACTGTCAAGAGGTTTCTGCATCGATGACTTTACATTCCTGCGTGACCCGTGGAATTGGCTGGACTTCATGGTCATCTCCATGGC
Seq C2 exon
CTACATCACTGAGTTTGTGGACCTGGGGAACATCTCTGCTCTCAGAACCTTCCGTGTCCTCCGGGCCTTGAAAACCATCACAGTGATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=6.1)
A:
PF0052026=Ion_trans=FE(15.6=100)
C2:
PF0052026=Ion_trans=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCATCATGATCACCATTTTAACC
R:
TGGTATCACTGTGATGGTTTTCA
Band lengths:
170-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]