MmuEX6101742 @ mm9
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66170264-66173586:-
Coord C1 exon
chr2:66173497-66173586
Coord A exon
chr2:66172265-66172393
Coord C2 exon
chr2:66170264-66170355
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTTGGCTACTTGTTTCTAGGTA
3' ss Score
7.48
5' ss Seq
CGCGTAAGT
5' ss Score
9.93
Exon sequences
Seq C1 exon
ATTATTCAGCATGTTAATCATGTGCACTATTTTGACAAACTGTGTATTTATGACAATGAGTAACCCTCCCGACTGGACAAAGAATGTGGA
Seq A exon
GTACACCTTCACAGGAATATATACTTTTGAATCACTAATAAAAATTATTGCAAGGGGCTTCTGTTTAGAAGATTTTACTTTCCTTCGCGACCCATGGAACTGGCTGGACTTCACTGTCATTACATTCGC
Seq C2 exon
ATATGTGACGGAGTTTGTGGACCTGGGCAATGTCTCAGCATTGAGAACATTCAGAGTTCTTCGAGCATTGAAAACTATTTCAGTCATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(0.7=6.5)
A:
PF0052026=Ion_trans=FE(16.1=100)
C2:
PF0052026=Ion_trans=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTAATCATGTGCACTATTTTGA
R:
TGAAATAGTTTTCAATGCTCGAAGA
Band lengths:
163-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: