GgaEX6043024 @ galGal3
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
NA
Coordinates
chr7:30086064-30086889:-
Coord C1 exon
chr7:30086788-30086889
Coord A exon
chr7:30086297-30086527
Coord C2 exon
chr7:30086064-30086103
Length
231 bp
Sequences
Splice sites
3' ss Seq
TGGACATTTTGTTTTCACAGTGT
3' ss Score
7.13
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGCCTCGAATCCAGAGAAAGCCATCCACATGCTGTGCTCGGACTGCCCTTGTCATCTACCTGCTGCTGCTGACAGTCGGCCAGGTGCTGCTGGCGTACAAAG
Seq A exon
TGTTTAAGATGAAGGAGGAGATGCTGAAACGGCAGGAAAATACTGCTTTCCGTGCCGAAGAGATGATAGGAAGGTCCTATGCTGACAACCTTCTTTTGGAGAAAAACTTCACAGAGAGGGGCATGGGACGTGAAGAAAACTGGAGGAGGCACTTAGAAAAGGAAATCACCGTAATTAAAAGCAGCAATGCAAACTTGATGATGATGATGAGCAACATCACCCTGCTTGCAG
Seq C2 exon
GGCGTCCTGGACACAAAGGAGAACGCGGTCCACCAGGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.235 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(5.9=2.6)
C2:
PF0139113=Collagen=FE(38.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGAATCCAGAGAAAGCC
R:
ATACCTGGTGGACCGCGTTC
Band lengths:
141-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]