MmuEX0027943 @ mm10
Exon Skipping
Gene
ENSMUSG00000026390 | Marco
Description
macrophage receptor with collagenous structure [Source:MGI Symbol;Acc:MGI:1309998]
Coordinates
chr1:120493620-120494842:-
Coord C1 exon
chr1:120494741-120494842
Coord A exon
chr1:120494044-120494262
Coord C2 exon
chr1:120493620-120493655
Length
219 bp
Sequences
Splice sites
3' ss Seq
ACTGATGCTGTGGGTTCCAGTTC
3' ss Score
5.71
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCCAGTGCCCAAGAAGAGAAATGGGGGGACCTTCTGCATGGCAGTCATGGCCATCCACCTGATCCTGCTCACGGCAGGTACTGCACTGCTGCTGATTCAAG
Seq A exon
TTCTCAATCTGCAGGAGCAGCTCCAGATGCTAGAGATGTGCTGTGGCAATGGATCACTAGCTATCGAGGACAAGCCCTTCTTCTCGCTGCAGTGGGCACCCAAAACACACCTGGTACCTAGAGCACAGGGGCTGCAAGCCTTGCAGGCCCAGCTCAGCTGGGTCCATACCAGCCAGGAGCAACTCCGTCAGCAGTTCAACAACCTCACTCAAAATCCAG
Seq C2 exon
AGTTGTTCCAGATTAAAGGTGAACGAGGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026390_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.203 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(11.7=53.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTGCCCAAGAAGAGAAA
R:
TGGAGAGCCTCGTTCACCTTT
Band lengths:
136-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types