GgaEX6043024 @ galGal4
Exon Skipping
Gene
ENSGALG00000012119 | MARCO
Description
macrophage receptor MARCO [Source:RefSeq peptide;Acc:NP_990067]
Coordinates
chr7:27992162-27992983:-
Coord C1 exon
chr7:27992882-27992983
Coord A exon
chr7:27992391-27992621
Coord C2 exon
chr7:27992162-27992197
Length
231 bp
Sequences
Splice sites
3' ss Seq
TGGACATTTTGTTTTCACAGTGT
3' ss Score
7.13
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGCCTCGAATCCAGAGAAAGCCATCCACATGCTGTGCTCGGACTGCCCTTGTCATCTACCTGCTGCTGCTGACAGTCGGCCAGGTGCTGCTGGCGTACAAAG
Seq A exon
TGTTTAAGATGAAGGAGGAGATGCTGAAACGGCAGGAAAATACTGCTTTCCGTGCCGAAGAGATGATAGGAAGGTCCTATGCTGACAACCTTCTTTTGGAGAAAAACTTCACAGAGAGGGGCATGGGACGTGAAGAAAACTGGAGGAGGCACTTAGAAAAGGAAATCACCGTAATTAAAAGCAGCAATGCAAACTTGATGATGATGATGAGCAACATCACCCTGCTTGCAG
Seq C2 exon
GGCGTCCTGGACACAAAGGAGAACGCGGTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012119-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGAATCCAGAGAAAGCC
R:
GGACCGCGTTCTCCTTTGTG
Band lengths:
132-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]