GgaEX6043043 @ galGal3
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
NA
Coordinates
chr7:30875363-30936115:-
Coord C1 exon
chr7:30936001-30936115
Coord A exon
chr7:30928723-30928818
Coord C2 exon
chr7:30875363-30875457
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTATTTTTGTTTTAGATG
3' ss Score
10.37
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAACTTGGAAGTAACAGCCCTCCGCAGAGGAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTCTAGTTGTTTGCTCGCTCATCACTATGTCTGTCATTCTTTTAACACCAG
Seq A exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
Seq C2 exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAAGTAACAGCCCTCCG
R:
TCTACATTCAGTTCAATAACATGTCC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]