GgaEX6043043 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28775701-28835020:-
Coord C1 exon
chr7:28834906-28835020
Coord A exon
chr7:28827628-28827723
Coord C2 exon
chr7:28775701-28775795
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTATTTTTGTTTTAGATG
3' ss Score
10.37
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GAACTTGGAAGTAACAGCCCTCCGCAGAGGAACTGGAAGGGAATTGCTATTGCTCTGCTGGTGATTCTAGTTGTTTGCTCGCTCATCACTATGTCTGTCATTCTTTTAACACCAG
Seq A exon
ATGAGCTTGCAAATTCTTCTGAAACCAGATTGTCCTTGGAAGATCTCTTCAGAAAAGAGTTCATAGTTCATAATCCAGAAGCCAAATGGATTAATG
Seq C2 exon
ATACAGCAGTGGTGTATAAAGATAGGAATGGACATGTTATTGAACTGAATGTAGAAACAAATACAACTACATTATTATTGGAAAACACAACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059157=DUF872=FE(66.7=100)
A:
PF059157=DUF872=PD(21.1=36.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAAGTAACAGCCCTCCG
R:
TCTACATTCAGTTCAATAACATGTCC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]