MmuEX6026983 @ mm9
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:125582798-125801753:-
Coord C1 exon
chr1:125801639-125801753
Coord A exon
chr1:125750743-125750838
Coord C2 exon
chr1:125582798-125582892
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTTTTCTTTTCAGATG
3' ss Score
12.13
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GAACTAGGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGATCTTGGTGGTATGCTCACTCATCACAATGTCTGTCATCCTGTTAACACCAG
Seq A exon
ATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATG
Seq C2 exon
ATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAAGGGAATCGCCATTG
R:
TGTCCAATAACAATGTGGAAGCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: