GgaEX6043145 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33674650-33724106:-
Coord C1 exon
chr7:33723849-33724106
Coord A exon
chr7:33705712-33705874
Coord C2 exon
chr7:33674650-33674872
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCTTCTTTTGGCAGATG
3' ss Score
11.75
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
AGCCTGCTGATAGACCTCCTTTTCTTCTGATTGCAAACTCTGAAACAATAGAGGTATTACATCTTAATGGAAGCAAAGTGTCTGCCCGAACTCCTGTAAAAGGATCTTCAGTTTTGACACTAGATTATAGCTACAGAGAGGACACTATTTGTTGGATTGAATCAAGGGATCTTGCAAGTCAGCTGAAATGTACGAAGATAACAAAAGCCGGAAAGTTAACAGACGAGTGGATAATAAACGTTGTGCAGTATCTTCACA
Seq A exon
ATGTGCAGCAAATAGCAATTGATTGGATCACTGGAAACTTTTACTTTCTGGATCATGTCAGTGATAGGATCTTCGTTTGCAACCAGAACGGAACGGTGTGCATTACACTCATTGAGCTGGACCTCAGTAACCCTAAGGCCATAGCTGTTGATCCAACCTCAGG
Seq C2 exon
AAAGCTTTTCTTTACAGACTACGGGAATGTTGCCAAGGTTGAGAGATGTGACATGGATGGAATGAACAGAACATGGATAGTGGACTCTAAAATTGAACAGCCAACTGCTCTTGCACTTGACCTCATCAATAAATATGTGTACTGGGTTGACATCTATCTGGATAATGTGGAAGTTGTTGACTACGAAGGGAGAAAGAGACATACAGTTATAAAAGGCAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'11-21,'11-18,12-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGCAAAGTGTCTGCCC
R:
GTCACATCTCTCAACCTTGGCA
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]