DreEX6098152 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14653870-14661230:-
Coord C1 exon
chr22:14660973-14661230
Coord A exon
chr22:14660142-14660304
Coord C2 exon
chr22:14653870-14654092
Length
163 bp
Sequences
Splice sites
3' ss Seq
AACCGTTTCTTCCATTTTAGATG
3' ss Score
10.4
5' ss Seq
GGGGTATGA
5' ss Score
5.41
Exon sequences
Seq C1 exon
ATCCTGGTGATAAACCTCCGGTTCTGTTGACAACAAATCTGAATTTCATATCAGTTCTTTACCTCAATGGATCAACTATGCCAAATCTCAAGTCCATGGAGACAAATGGGACTCAAATGCTGGACTTTATTTACAGAGAAGAGTCTTTATGTTGGCTGTCGGTGGTGCAGGACACGGGGCAGCTGTGGTGCGCTCGCATGACCAAACTTAAAGGATTTTCAGAAAAACACCAGATACGGATAGGCCAAAACCTACAAA
Seq A exon
ATGTGGAGCACATGGCCATCGACTGGTTAACAGGAAACTTCTATTTTGTGGATCGGGTGAACGACCGGATATTCGTGTGTAGTGAGCAGGGAGACACTTGTGTGACCATTATTGACCTGGACATTCAAAACCCAAAAGGCCTGGCACTGGATCCCATAATGGG
Seq C2 exon
AAAGCTATTTTTCACGGACTATGGGACAGTTGCCAAGGTTGAGCGATGCAACATGGACGGCACCAACCGAACCAAGATAGTGGAGTATAAAACTGAACAGCCAACCGCTGTGACGTTGGACTTAGTTAAGAAACTTGTCTACTGGTCGGACGCATATCTGGATTTTATCGAAGTTGTGGATTACAATGGCAAGAACAGGCAAACAATCGTACAAGGAAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGATACGGATAGGCCA
R:
ACGATTGTTTGCCTGTTCTTGC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]