RnoEX0050667 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70901017-70911842:-
Coord C1 exon
chr7:70911579-70911842
Coord A exon
chr7:70901347-70901509
Coord C2 exon
chr7:70901017-70901239
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTCCATTCTCCAGACG
3' ss Score
9.34
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
AGCCAGTAGATCGGCCCCCGGTGCTACTGATTGCCAACTCCCAGAACATCCTAGCTACGTACCTGAGCGGAGCCCAGGTGTCTACCATCACACCCACCAGCACCCGACAGACCACAGCCATGGACTTCAGTTATGCCAACGAGACTGTATGCTGGGTACATGTTGGGGACAGTGCTGCCCAGACGCAGCTCAAGTGTGCCCGGATGCCTAGCCTGAAGGGCTTCGTGGATGAGCATACCATCAACATCTCCCTGAGTCTGCACC
Seq A exon
ACGTTGAGCAGATGGCTATCGACTGGCTGACTGGGAACTTCTACTTTGTGGATGACATCGATGACAGGATCTTTGTCTGTAACCGAAATGGGGACACCTGTGTCACTTTGCTGGACCTGGAGCTCTACAATCCCAAAGGCATCGCCCTGGACCCTGCCATGGG
Seq C2 exon
GAAGGTGTTCTTCACTGACTACGGGCAGATCCCAAAGGTGGAACGCTGTGACATGGACGGACAGAACCGCACCAAGCTGGTCGATAGCAAGATTGTATTTCCACATGGCATCACCCTGGACCTGGTCAGCCGCCTCGTGTACTGGGCGGACGCCTACCTTGACTATATCGAGGTGGTAGACTATGAAGGAAAGGGCCGGCAGACCATCATCCAAGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'8-9,'8-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACCATCACACCCACCA
R:
GGTTCTGTCCGTCCATGTCAC
Band lengths:
254-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]