DreEX6090197 @ danRer10
Exon Skipping
Gene
ENSDARG00000097827 | LRP1 (2 of 2)
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr11:1677019-1691638:+
Coord C1 exon
chr11:1677019-1677279
Coord A exon
chr11:1691100-1691262
Coord C2 exon
chr11:1691416-1691638
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCATGTTTTACAGATG
3' ss Score
11.62
5' ss Seq
GGGGTGGGA
5' ss Score
-0.25
Exon sequences
Seq C1 exon
TGCCTGTGGATCGTCTGCCCGTCTTACTGATCGCCAACTCCCAGAACATCCAGATCACGTCTCTGAGCGGCTCCAGCAGCCCGTCGCTCCACATCACCACAAAGCAGACCACGGCCATGGACTTCCTGTACACGCAGGAAACCATCTGCTGGATCAACGTGGGCGACTCTCCGGCCGGAACGCATCTGAAGTGCGCCAAGATCGCAGGACTCAAGAGCTTCAGCGAGGAGAGGACCATCAACATCTCGCTCAGCCTGCACC
Seq A exon
ATGTAGAGCAGATGGCCATCGACTGGCTTACGGGAAACTTCTACTTTGTTGATGACGTGGATGATCGAATCTTTGTATGCGATAAAGATGGAGCCACATGTGTGACACTGCTGGACCAAGAGCTCTACAACCCCAAAGGCATCGCTCTGGACCCGACTATGGG
Seq C2 exon
GAAGGTTTTCTTCACTGATTATGGGCAGATCCCGAAGGTGGAACGCTGTGACATGGATGGACAGAACCGGACAAAGTTGGTGGACAGTAAAATAGTTTTCCCGCATGGAATCACCCTGGATTTGGTCAACAGGCTGGTCTACTGGGCCGATGCTTATCTGGACTACATCGAGGTTGTGGACTATGAGGGCAAAAACAGACACACCATCATTCAAGGACTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097827-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGGACTCAAGAGCTTCAG
R:
TGCCCTCATAGTCCACAACCT
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]