MmuEX6051936 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127594949-127605672:-
Coord C1 exon
chr10:127605409-127605672
Coord A exon
chr10:127595285-127595447
Coord C2 exon
chr10:127594949-127595171
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTTCCTTTTCCAGACG
3' ss Score
12.54
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGCCAGTAGATCGGCCGCCAGTGCTACTGATTGCCAACTCTCAGAACATCCTAGCTACGTACCTGAGTGGGGCCCAAGTGTCTACCATCACACCCACCAGCACCCGACAAACCACGGCCATGGACTTCAGTTATGCCAATGAGACCGTATGCTGGGTGCACGTTGGGGACAGTGCTGCCCAGACACAGCTCAAGTGTGCCCGGATGCCTGGCCTGAAGGGCTTTGTGGATGAGCATACCATCAACATCTCCCTCAGCCTGCACC
Seq A exon
ACGTGGAGCAGATGGCAATCGACTGGCTGACGGGAAACTTCTACTTTGTCGACGACATTGACGACAGGATCTTTGTCTGTAACCGAAACGGGGACACCTGTGTCACTCTGCTGGACCTGGAACTCTACAACCCCAAAGGCATCGCCTTGGACCCCGCCATGGG
Seq C2 exon
GAAGGTGTTCTTCACTGACTACGGGCAGATCCCAAAGGTGGAGCGCTGTGACATGGATGGACAGAACCGCACCAAGCTGGTGGATAGCAAGATCGTGTTTCCACACGGCATCACCCTGGACCTGGTCAGCCGCCTCGTCTACTGGGCGGACGCCTACCTAGACTACATCGAGGTGGTAGACTACGAAGGGAAGGGTCGGCAGACCATCATCCAAGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'17-14,'17-13,20-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGCTTTGTGGATGAGCA
R:
CGACCCTTCCCTTCGTAGTCT
Band lengths:
248-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types