BtaEX0020531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56615615-56625395:-
Coord C1 exon
chr5:56625132-56625395
Coord A exon
chr5:56615931-56616093
Coord C2 exon
chr5:56615615-56615837
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTCCCACTCTCCAGATG
3' ss Score
9.65
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
AGCCGGTTGACCGGCCCCCTGTGCTGCTGATTGCCAACTCGCAGAACATCCTGGCCACGTACCTGAGTGGGGCCCAGGTTTCCACCATCACACCCACCAGCACACGGCAGACCACAGCCATGGACTTCAGCTACGCCAACGAGACGGTGTGCTGGGTGCATGTTGGCGACAGCGCTGCCCAGACACAGCTCAAGTGCGCCCGCATGCCCGGCCTGAAGGGCTTCGTGGATGAGTACACCATCAACATCTCCCTCAGCCTGCACC
Seq A exon
ATGTGGAGCAGATGGCCATCGACTGGCTGACCGGCAACTTCTACTTTGTGGATGACATTGATGACAGGATCTTTGTCTGCAACCGAAACGGGGACACGTGTGTCACTCTCCTAGACCTGGAGCTGTACAACCCCAAGGGCATTGCACTGGACCCTGCCATGGG
Seq C2 exon
GAAGGTGTTCTTCACTGACTACGGGCAGATCCCCAAAGTGGAGCGCTGTGACATGGACGGGCAGAACCGCACCAAGCTGGTTGACAGCAAGATTGTGTTTCCTCACGGCATCACGCTGGACCTTGTCAGCCGCCTTGTCTACTGGGCTGATGCCTACCTGGATTACATTGAGGTGGTGGACTACGAGGGCAAGGGCCGGCAGACCATCATCCAGGGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACATCCTGGCCACGTAC
R:
GGATCTGCCCGTAGTCAGTGA
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development