DreEX6080784 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25638016-25665684:-
Coord C1 exon
chr23:25665430-25665684
Coord A exon
chr23:25640393-25640555
Coord C2 exon
chr23:25638016-25638238
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCTTTGTCTTCTAGATA
3' ss Score
11.52
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACCCAGTGGATCGGCTCCCGTTCCTCCTTATAGCCAACTCCCAAAACATCCAAGCCACCTCTCTGAGTGGAGCAAACCCTATTACCATCAACGACAAACAGACCACCACAATGGACTTCATCTACGCCCAGGAGACCGTGTGCTGGATCCACATGGGCGACTCTCCCACTGCCTCGCAACTCAAGTGTGCCAAGTTTCCCAATGCCAAGAGCTTTACGGAGGAGAAGACCATTAACATCTCCCTCAGCCTGCACC
Seq A exon
ATATGGAGCAGATGGCCATTGACTGGTTGACCGGAAACTTCTACTTTGTGGATAATGTGGATGACCGCATATTTGTATGCAGTAAAGACGGCTCCATCTGCGTGATCCTGTTGGATATGGAGCTCTACAGCCCTAAAGGAATCGCTCTTGACCCTGCCATGGG
Seq C2 exon
AAAAGTGTTCTTCACAGATTATGGCCAGACCCCAAAAGTAGAGCGCTGTGATATGGACGGGCAGAACCGCACCAAACTAGTGGACAGTAAAATCGTCTTCCCTAACGGCATCACTCTGGACCTGGCCAACAAGCTGGTGTACTGGACTGATGCTTACTTAGATTATATTGAGGTGGTGGATTACGAAGGCAAGAACCGGCACACCATCATTCAGGGCTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146-'5-13,'5-12,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=56.0),PF0005812=Ldl_recept_b=PU(71.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAACATCCAAGCCACCT
R:
TCTACTTTTGGGGTCTGGCCA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]