GgaEX6043153 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33634383-33642139:-
Coord C1 exon
chr7:33641957-33642139
Coord A exon
chr7:33635578-33635778
Coord C2 exon
chr7:33634383-33634628
Length
201 bp
Sequences
Splice sites
3' ss Seq
TATTGTCTCTTTTCTCCAAGGGA
3' ss Score
6.74
5' ss Seq
GTGGTATTT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAACTCCTGCTCCTGGACGATGCAATGGGAAGGAATTTCAGTGCAGTCCTGATGGGAACTGTGTTCCTGAGCTGTGGCGCTGTGATGGAGAAAAGGACTGTGAAGATGGCAGTGATGAAAAAGGCTGTAATGGAACTTTACGTCTGTGTGATGAAAAGACAAAGTTCTCCTGTGTGAGTACAG
Seq A exon
GGAGATGCATTAGCAAAGCGTGGCTATGTGATGGCGATATTGATTGTGAGGATCAGTCTGATGAGGATAATTGCGAGGGCTATATGTGTGGACCACCAAAATACCCTTGTGCTAATGATACCTCCATCTGCCTACAGCCTGAGAAGCTCTGCAATGGGAGAAGAGATTGTCCTGATGGATCTGATGAAGGCGATCTTTGTG
Seq C2 exon
ATGAATGTTCGCTTAATAATGGTGGATGTAGTCATCAATGTTCCGTGGTTCCTGGAGGAAGAATTGTGTGCTCATGCCCCTCAGGATTCAATCTCAGTGTAGACAACAAAACTTGTGAAATTATGGATTATTGCACCAAGCACCTTAAGTGTAGTCAAGTATGTGAACAACATAAAAATAATGTGAAATGCTCATGTTATGAAGGCTGGAAGCTCAGTAAAGATGGAGAAAATTGCATTAGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'33-42,'33-39,34-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
A:
PF0005713=Ldl_recept_a=PD(61.5=35.3),PF0005713=Ldl_recept_a=PU(93.0=58.8)
C2:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=41.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTGATGAAAAAGGCTGT
R:
TTACTGAGCTTCCAGCCTTCA
Band lengths:
297-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]