RnoEX6016697 @ rn6
Exon Skipping
Gene
ENSRNOG00000030243 | AABR07051892.1
Description
NA
Coordinates
chr3:25962947-25991962:-
Coord C1 exon
chr3:25991780-25991962
Coord A exon
chr3:25965497-25965697
Coord C2 exon
chr3:25962947-25963192
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTCGTTCCTTTCCTTTAAGGGC
3' ss Score
10.06
5' ss Seq
GTGGTACTG
5' ss Score
2.53
Exon sequences
Seq C1 exon
AAGCTCGTTCTCCTGTTGGATGCATTGGGAATGAATTTCAGTGCCACCCTGATGGAAACTGCATTCCTGATCTATGGCGCTGTGATGGAGAGAAAGATTGTGAGGATGGCAGTGATGAAAAGGGCTGCAATGGTACCATTCGACTGTGTGACCACAAAACCAAGTTCTCCTGCAAAAGTACAG
Seq A exon
GGCGATGCATCAACAATGCCTGGGTATGTGATGGAGATGTTGACTGTGAGGATCAGTCTGATGAAGAAGACTGCGATAGTTTCTTGTGTGGACCACCCAAGTACCCTTGTGCCAATGATACCTCTGTGTGCCTGCAGCCAGAGAAACTCTGCAATGGGAGAAAGGACTGTCCAGATGGGTCAGATGAAGGCGACCTTTGTG
Seq C2 exon
ATGAATGTTCTCTGAACAACGGAGGCTGTAGCAACCACTGTTCCGTTGTACCTGGAAAAGGAATTGTCTGTTCCTGCCCAGAAGGACATCAGCTCAAGAAGGACAATAGAACCTGTGAAATCGTAGACTACTGCTCCTCCCACCTGAAGTGTAGCCAAGTGTGCGAACAGCACAAACACATGGTCAAGTGCTCCTGCTATGAAGGCTGGGCGTTGGATACTGATGGGGAAAGCTGCATCAGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030243-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
A:
PF0005713=Ldl_recept_a=PD(61.5=35.3),PF0005713=Ldl_recept_a=PU(92.9=57.4)
C2:
PF0005713=Ldl_recept_a=PD(4.8=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=42.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAATGGTACCATTCGA
R:
CACTGATGCAGCTTTCCCCAT
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]