GgaEX6043158 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31484656-31495849:-
Coord C1 exon
chr7:31495700-31495849
Coord A exon
chr7:31487027-31487167
Coord C2 exon
chr7:31484656-31484781
Length
141 bp
Sequences
Splice sites
3' ss Seq
AAAACTTGAATTTTTTACAGATA
3' ss Score
6.51
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
Seq A exon
ATAAAAAGCTTTGGTGGGCAGACCAGAATTTAGCTCAGATTGGAACCTGTAACAAACGAGATGGAAGGAACCCAACTATCCTGCGAAACAAGACTTCAGGTGTTGTGCATATGAAAGTATATGATAAAGCAGCACAGCAAG
Seq C2 exon
GTAGCAATTCCTGTCAATTCAATAATGGTGGATGTTCCCAGCTCTGTTTACCAACATCAGAAAGTACAAGAACCTGTGTTTGTACAGTAGGCTACAACCTCCAAAAAAACCGCATGGCATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'44-69,'44-68,46-69=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
ENSGALT00000020272fB2224
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGAGAACAAACTTTACTGGA
R:
TTTTTGGAGGTTGTAGCCTACTGT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]