GgaEX6043172 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31446960-31451753:-
Coord C1 exon
chr7:31451604-31451753
Coord A exon
chr7:31448133-31448255
Coord C2 exon
chr7:31446960-31447079
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTATTTTATCACAGTTC
3' ss Score
6.53
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATAATACAAACTGTGCTTACTTCTATAAACTTGGAATCAAATCTACAGGATTTATTAGCTGTAATTCCACTTCACTTTGTATACTGCCAGAATGGATATGTGATGGATCTAATGACTGTGGAGATTATACAGATGAACTAAAATGCCCAG
Seq A exon
TTCAAAACAAACCCACATGTGAAGAAAATTATTTTGGTTGTCCTAGTGGAAGATGTATTCTGAACACCTGGCTTTGTGATGGGCAGAAAGACTGCGAGGATGGTGTGGATGAATTGCACTGTG
Seq C2 exon
ATTCGTCCTGCTCGTGGAATCAGTTTGCTTGTTCTGCAGACAAGTGCATCTCTAAGCAATGGACTTGTGATGGTGAGGATGATTGTGGAAATGGTTTAGATGAGAGTGATGCTATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'66-90,'66-88,67-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=70.6)
A:
PF0005713=Ldl_recept_a=WD(100=88.1)
C2:
PF0005713=Ldl_recept_a=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGCTTACTTCTATAAACTTGGA
R:
AGCATCACTCTCATCTAAACCAT
Band lengths:
254-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]