HsaEX0036413 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140514653-140525993:-
Coord C1 exon
chr2:140525844-140525993
Coord A exon
chr2:140516889-140517011
Coord C2 exon
chr2:140514653-140514772
Length
123 bp
Sequences
Splice sites
3' ss Seq
CATTCCATATTTTATCACAGTTC
3' ss Score
5.44
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
ATAACACAGACTGCACACATTTCTATAAGCTTGGAGTGAAAACCACAGGGTTCATAAGATGTAATTCTACCTCACTGTGTGTTCTGCCAACCTGGATATGCGACGGGTCTAATGACTGTGGAGACTATTCAGATGAATTAAAGTGCCCAG
Seq A exon
TTCAAAACAAACACAAATGTGAAGAAAATTATTTTAGTTGTCCTAGTGGAAGATGCATTTTGAATACCTGGATATGCGATGGTCAGAAAGATTGTGAGGATGGACGTGATGAATTCCACTGTG
Seq C2 exon
ATTCTTCTTGCTCTTGGAACCAATTTGCTTGTTCCGCACAAAAATGTATTTCTAAGCATTGGATTTGTGATGGAGAAGATGACTGTGGGGATGGGTTAGATGAAAGTGACAGCATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'77-109,'77-108,78-109
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=68.6)
A:
PF0005713=Ldl_recept_a=WD(100=88.1)
C2:
PF0005713=Ldl_recept_a=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGACTGCACACATTTCT
R:
ACCCATCCCCACAGTCATCTT
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development