MmuEX6101053 @ mm10
Exon Skipping
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:40886641-40903126:-
Coord C1 exon
chr2:40902977-40903126
Coord A exon
chr2:40889222-40889344
Coord C2 exon
chr2:40886641-40886760
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATGTTTTATCATAGTTC
3' ss Score
6.65
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATAATACAGATTGCACACATTTCTACAAACTTGGAGTGAAATCCACAGGATTCATTAGGTGTAACTCTACCTCACTGTGTGTTCTACCAAGCTGGATATGTGATGGATCTAATGACTGTGGAGACTATTCTGATGAATTAAAGTGCCCAG
Seq A exon
TTCAAAACAAACACAAATGTGAAGAGAATTATTTTGGTTGTCCTAGTGGAAGATGCATTTTGAATACCTGGGTATGTGATGGTCAGAAGGACTGCGAGGACGGGCTGGATGAGCTACACTGTG
Seq C2 exon
ATTCTTCTTGCTCTTGGAATCAATTTGCTTGTTCTGTAAAAAAATGTATTTCTAAACACTGGATCTGTGATGGAGAGGATGACTGTGGAGACAGCTTAGATGAAAGTGACAGCATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-'77-76,'77-74,78-76
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=70.6)
A:
PF0005713=Ldl_recept_a=WD(100=88.1)
C2:
PF0005713=Ldl_recept_a=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACACATTTCTACAAACTTGGA
R:
TGCTGTCACTTTCATCTAAGCTGT
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types