GgaEX6043270 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36886059-36887497:-
Coord C1 exon
chr7:36887393-36887497
Coord A exon
chr7:36887129-36887236
Coord C2 exon
chr7:36886059-36886370
Length
108 bp
Sequences
Splice sites
3' ss Seq
AAAATTGTTTTCAATTTTAGAAA
3' ss Score
8.77
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
CATGCTTATACTCAGGCTTGGGAGAAGGATAAAACTCAAGTTCATGTGATGCCAGATACACCAGATATTCTACAGGCAAAGCAGAACAAGGCGAACTACAGTCAG
Seq A exon
AAACAATACAAGCTCGACTGGCAGGAAATGATAAAGAAGGGCTATGACCTCACACCTGAAGCCATTTCAGTGAAAGCTGCCAAAGCTTCAAGGGACATTGCAAGCGAC
Seq C2 exon
TACAAATACAAAGAGGGTTACCGCAAGCAACAGGGACATCATATTGGATTCCGGAGCTTACAGGATGATCCGAAGATGATGTGGTCTATGCAAGTAGCTAAGATGCAGAGTGAGAGGGAGTATAAGAAAGATTTTGAAAAGTGGAAGACAAAGTTTAACATGCCTGTGGATATGTTAGGCTTCCTTCTGGCTAAGAAATGTCAGGAATTGGTTAGTGATATAGACTACAAACACATGCTACACCGCTGGACTTGTCTACCAGACCAAAATGATGTCACCCAAGCAAAGAGGGTCTACGAACTACAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGCCAGATACACCAGA
R:
AGCCAGAAGGAAGCCTAACAT
Band lengths:
253-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]