RnoEX6016803 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37785764-37792093:-
Coord C1 exon
chr3:37791989-37792093
Coord A exon
chr3:37789365-37789472
Coord C2 exon
chr3:37785764-37786075
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTCTTTACTTTTCAGAAA
3' ss Score
7.76
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CATTTATACACCGTTGACTGGAATAAAGATAAAACCAAGATTCATGTGATGCCTGATACACCAGATATTTTGCAAGCCAAGCAGAATCAGACACTTTACAGTCAG
Seq A exon
AAATTCTACAGACTTGGTTGGGAAGAGGCTCTGAAGAAAGGCTACGATCTCCCTGTTGATGCAATTTCTGTCCAGCTGGCCAAGACATCAAGGGACATTGCTAGTGAC
Seq C2 exon
TTTAAATATAAACAAGGCTACCGGAAACAACTGGGACACCATATTGGATTCCTGAGCGTGCAAGATGACCCAAAGCTTGTGCTATCGATGAATGTAGCCAAAATGCAAAGTGAAAGAGAGTACAAGAAAGACTTTGAGAAGTGGAAGACCAAATACACCAGCCCTGTGGACATGCTGGGTGTGGTGTTGGCCAAGAAGTGCCAGGCCTTGGTCAGTGATGTGGACTACAAGAACTACCTACACCAGTGGACGTGCTTGCCTGACCAGAATGACGTCATCCAAGCTAAAAAGGTCTATGAGCTGCAAAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'52-55,'52-53,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCCAAGCAGAATCAGA
R:
CACATCACTGACCAAGGCCTG
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]