BtaEX0024185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44616250-44648591:+
Coord C1 exon
chr2:44616250-44616354
Coord A exon
chr2:44617344-44617451
Coord C2 exon
chr2:44648280-44648591
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTTAATTTTCAGAAA
3' ss Score
9.95
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TATTTATACACCGTTGATTGGAACAAAGATAAAACGAAGATTCACGTGATGCCAGATACGCCAGATATTTTACAAGCCAAACAAAATCAAACCATGTACAGTCAG
Seq A exon
AAACTCTATAAACTTGGATGGGAAGAAGCTTTGAAAAAAGGCTATGATCTCCCAGTTGATGCAATTTCTGTGCAGGCAGCCAAAGCTTCCAGAGACATCGTTAGTGAT
Seq C2 exon
TACAAATACAAAGAAGCTTACCGTAAGCAGTTGGGTCACCATATTGGTGCCCGAGCAATACATGATGACCCCAAGATGATGTGGTCTGTCCACGTTGCCAAAATGCAGAGTGACCGTGAGTACAAGAAAGATTTTGAAAAATACAAGACCAGGTTCAGCAGCCCAGTGGACATGCTTGGTATTGTTTTGGCGAAGAAATGTCAGACTTTGGTTAGTGATGTGGACTATAAACATCCTCTGCATGAGTGGACCTGCCTGCCCGACCAGAATGACATCATCCATGCTCGGAAAGCCTATGACCTCCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907_MULTIEX5-8/55=7-29
Average complexity
C3
Mappability confidence:
81%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(79.2=50.0)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACGTGATGCCAGATACGC
R:
ATACCAAGCATGTCCACTGGG
Band lengths:
247-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development